Welcome

CODEX provides access to processed and curated NGS experiments, including ChIP-Seq (transcription factors and histones), RNA-Seq, DNase-Seq and ATAC-Seq.

To use CODEX: (i) select a specialized repository (HAEMCODE or ESCODE) or choose the whole compendium (CODEX), then (ii) filter by organism and (iii) choose how to explore the database.

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• 1Repository»
• 2Organism»
• 3Explore

HAEMCODE »

The specialised Haematopoietic Cell compendium of NGS experiments.

ESCODE »

The specialised Embryonic Stem Cell compendium of NGS experiments

CODEX »

The whole compendium comprising NGS experiments of multiple cell types.

Mouse »

Select experiments for Mus musculus.

Human »

Select experiments for Homo sapiens.

Browse »

Browse the entire compendium and select experiments to analyse or download.

Search »

Select experiments by searching the compendium for a cell type or factor.

Gene Quest »

Search for transcription factors/genes associated to your genes/transcription factors of interest.

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